PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g012700.1
Common NameMTR_2g012700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 123aa    MW: 14081.8 Da    PI: 4.6974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g012700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-1130109786
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      +s    ++ l +p++ a e+g+  ++sk l +  e+ +s++  +   +k+  + ++++GW +Fv ++gLk+gD++++++++
  Medtr2g012700.1  30 TSILDGNNVLHFPRRVA-ENGLYINQSKILLFDEETDKSYDCDVHTtSKSMHQKYIGRGWYDFVLEKGLKVGDVILLTVNN 109
                      55566778899****99.8877778999999999*********955355555599*********************99643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-1321110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.74224122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-924108IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-933108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MNEIGVEDNG TDLENVQNVD VHYWKYNVTT SILDGNNVLH FPRRVAENGL YINQSKILLF  60
DEETDKSYDC DVHTTSKSMH QKYIGRGWYD FVLEKGLKVG DVILLTVNNP PNRMYAAVVN  120
WE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g012700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095311e-139AC209531.2 Medicago truncatula chromosome 2 BAC clone mth2-102o9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7INX63e-85G7INX6_MEDTR; B3 DNA-binding domain protein
STRINGAES637381e-84(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]