PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g013920.1
Common NameMTR_2g013920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 175aa    MW: 20144.3 Da    PI: 10.168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g013920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-111060355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                     +  + +Er+RR++++   ++L +llP++   +sk   s  + L++A++YIk+Lq
  Medtr2g013920.1 10 VDRKFVERNRRNQMKALCQKLNSLLPHQ---TSKEaISVPDQLKEATNYIKKLQ 60
                     556779*********************8...66666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-12574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-6564No hitNo description
PROSITE profilePS5088810.988759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-11971IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-81360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MENNPSSSRV DRKFVERNRR NQMKALCQKL NSLLPHQTSK EAISVPDQLK EATNYIKKLQ  60
INLEKMKEKK NFLLGIQRPN VNLNRNQKMG LKSPKIKIQQ IGLVLEVVLI TGLESQFLFS  120
ETFRVLHEEG VDIVNASYKV NEDSVFHSIH CQVGEFGNEA ARISERLKKF MQDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g013920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1498010.0AC149801.3 Medicago truncatula chromosome 2 clone mth2-32i15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593591.11e-125transcription factor bHLH162
TrEMBLG7IPU71e-124G7IPU7_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES638421e-125(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-45bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]