PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g014100.1

Common Name

MTR_2g014100

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 252aa MW: 28758.9 Da PI: 9.4037

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g014100.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.8	3.2e-17	58	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY +YA+++GFs+r ++k k+++++ ++vC+k+g+++ + + + + ++++ +r+gCka + +k+++ +++ Medtr2g014100.1 58 DFYGNYAYNTGFSIRCMLKSKInsqnKKSDKVHYMRYVCNKQGFKKGSLLNpnnrstsdspvviEFVKVKEKPDERVGCKAGIFLKLDEvLNVY 151 6***********97654443344589999***********998888889999999998888889***************99* PP FAR1 77 evtkleleHnHela 90 ++++ + +H H+l Medtr2g014100.1 152 RIYRWDVDHCHPLH 165 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-14	58	165	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDLISTSSKS GQLTVETSSS LIHADSSPTH ADSSQCYSPS NKESWKSLVF QSIKEIEDFY 60 GNYAYNTGFS IRCMLKSKIN SQNKKSDKVH YMRYVCNKQG FKKGSLLNPN NRSTSDSPVV 120 IEFVKVKEKP DERVGCKAGI FLKLDEVLNV YRIYRWDVDH CHPLHKPEHL WYLRSFREVN 180 EVQGQLALIN SKAGMSMRTS YEVMGQGVGG TENLPFRFSD LKNYLMTIRQ KEMVVGEATV 240 IQKFLIIHLR H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g014100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146855	0.0	AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013441754.1	1e-159	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024630274.1	1e-156	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024632961.1	1e-155	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	G7ISC6	0.0	G7ISC6_MEDTR; FAR1 DNA-binding domain protein
STRING	AES63859	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-12	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Medtr2g014100.1
Entrez Gene	11443822

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]