PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g014490.1
Common NameMTR_2g014490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 1797aa    MW: 202429 Da    PI: 5.1811
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g014490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-184297257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR+  t+ qle Le++++ + yps+++r eL++klgL++rq ++WF+ rR k+kk
  Medtr2g014490.1 42 PKRQMKTPFQLEMLEKAYALETYPSETTRIELSEKLGLSDRQLQMWFCHRRLKDKK 97
                     69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-182498IPR009057Homeodomain-like
SuperFamilySSF466895.56E-172897IPR009057Homeodomain-like
PROSITE profilePS5007116.7953898IPR001356Homeobox domain
SMARTSM003891.1E-1740102IPR001356Homeobox domain
PfamPF000464.3E-164297IPR001356Homeobox domain
CDDcd000865.41E-144398No hitNo description
PROSITE profilePS5082716.118570629IPR018501DDT domain
SMARTSM005711.5E-19570629IPR018501DDT domain
PfamPF027911.2E-16572626IPR018501DDT domain
PfamPF050662.5E-14752819IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156125.8E-99611004IPR028942WHIM1 domain
PfamPF156133.7E-1311421214IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1797 aa     Download sequence    Send to blast
MEAEAENNSQ KGDDGGENSN ENFNNNGSNN KIVSSSEGQS KPKRQMKTPF QLEMLEKAYA  60
LETYPSETTR IELSEKLGLS DRQLQMWFCH RRLKDKKELP VKKARKAPPL LDSPTHEPNP  120
KLILEPCNEY GSGSGSGSSP FARTELRNVV PPPRSYYESP QTIMELRAIA CVEAQLGEPL  180
REDGPILGIE FDPLPPDAFG APLAVAEQQK RPSLAYDSKI YERHEVRTNK AMARTFPEYP  240
FVPNQPSIRS DMFGQLSQPH LYDPMEGPAR TPPFPIGNEH LPRIHGTQSQ SSRARLSSQH  300
DKPVTPYTSP PPFLSQQDKQ SIPYPSPPRD NDVVPKREPH PNIANTGINS QFTDHQIGGQ  360
ENPLALPGGQ VFHNDTVLRV EKKRKTDDAR VVKEVEAYEI RMKKELEKQD ILRRKNEERM  420
RKEMERLDRE RRKEEERMMR ERQREEERLK REQRREIERR EKYMIKEHLR AEKRKQKEEI  480
RKEKEAERRK AALEKANARR IAKESTELIE DEQLELMELA AASKGLSSII HIDLDTLQNL  540
ESFRDSLCVF PPKSVKLKKP FAIQPWINSE QDVGNLLMVW RFLITFADAL ELWPFTLDEF  600
VQAFHDYDSR LLGEIHVAVL KMIIKDIEDV ARTPSTGLGV NQNGAANPAG GHPEIVEGAY  660
TWGFDIRNWQ KNLNQLTWPE ILRQLALSAG FGPQLKKRSI TWSCANDKEE GRSGDDVIST  720
LRNGSAAVSA VAKMREKGLL APRRSRHRLT PGTVKFAAFH VLSLEGPKGL NVLELAEKIQ  780
KSGLRDLTTS KTPEASISVA LTRDGKLFER IAPSTYRVRT AFRQDPADAE SILSEARKKI  840
QIFENGFLAG EDAVDVEREE ESESDEVDED PEDDDLVNPS SGNQNSVQYD NMDISLVNVK  900
ENLANDVDLI QNKLDTDLPC FPENGSKDAD CPTSVTRQPV ACENLNARNL DDNMEIDESK  960
SGEPWVQGLT EGEYSDLSVE ERLNALVALV GVANEGNSIR IILEDRLEAA NALKKQMWAE  1020
AQIDKVRLKD DYISKLDFPS LAGNKFETQD TYPAVEGNQS PLLDININNI KNEASPSTAE  1080
NQRGAPSAQS LLIEKPLVAH DFCPGTGPDN SQSQMHAQYS KRSRSQLKSY ISHIAEEMYV  1140
YRSLPLGQDR RRNRYWQFVA SASSNDPGSG RIFVEHHDGS WRLIDSEEAF DILLTSLDSR  1200
GIRESHLRLM LQKIEKSFKE NVRKNTQCTK IGSKGEGSMK TEADETYPVP EHLSGSGSPS  1260
STLHELNSGT SETSSSFKIE LGKSENEKKA ALRRYQDFQK WMWKECYNSS ILCAIKFGVK  1320
RCKPQVDICE ICLDPYFMED SHCNSCHQTF PSNNEFNISK HTFQCVGNLS KDIMEHSLPL  1380
RTRLLKVLLS CMEASVLSEA FGTIWTTDFR KHWGVKLNKS STVEELLQML TLFEKALRRD  1440
FLSSNFSTTD ELLGLSSMSK SAAHVSADPE SVALLPWVPL TTAALSLRLF EFDSSISYVK  1500
LERLEPVEEK EATEYIQRLP SRYTPFKPNR EFEAAALDHN GFTKVKPSAN KIARSGNKRG  1560
RGASDLGRGK KLSKRMYNSK QDIGRRNIKV TENLSQKLKQ QGQGTQGQGG GRGRRTVRKR  1620
RVEKRAVEDL LLGHAAASHS SKGGREPLRN LDEEWDLEKL SPMTPVHIGV AENSNSAEEV  1680
ESDDNAQAVE SDDDALAVES DDDAQAVEYD HGNWEIGYNG VSPNRWDRDL VGMSDEDVDN  1740
FEDEDNGNDN DIGIGIEENE EEDSEEDVMS EGSDGMLNRV VNVGGSEDVM SEDSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19097RRLKDKKE
2448454LKREQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.239780.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g014490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1551570.0AC155157.1 Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence.
GenBankAC1584970.0AC158497.2 Medicago truncatula chromosome 2 clone mth2-48e18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593644.10.0homeobox-DDT domain protein RLT1 isoform X1
TrEMBLG7ISG20.0G7ISG2_MEDTR; Homeobox domain protein
STRINGAES638950.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]