PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g014490.2
Common NameMTR_2g014490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 1808aa    MW: 203546 Da    PI: 5.2039
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g014490.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-184297257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR+  t+ qle Le++++ + yps+++r eL++klgL++rq ++WF+ rR k+kk
  Medtr2g014490.2 42 PKRQMKTPFQLEMLEKAYALETYPSETTRIELSEKLGLSDRQLQMWFCHRRLKDKK 97
                     69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-182498IPR009057Homeodomain-like
SuperFamilySSF466895.56E-172897IPR009057Homeodomain-like
PROSITE profilePS5007116.7953898IPR001356Homeobox domain
SMARTSM003891.1E-1740102IPR001356Homeobox domain
PfamPF000464.4E-164297IPR001356Homeobox domain
CDDcd000865.00E-144398No hitNo description
SMARTSM005717.9E-13570641IPR018501DDT domain
PROSITE profilePS5082713.15582641IPR018501DDT domain
PfamPF027911.7E-12589638IPR018501DDT domain
PfamPF050662.5E-14764831IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156125.8E-99731016IPR028942WHIM1 domain
PfamPF156133.7E-1311541226IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1808 aa     Download sequence    Send to blast
MEAEAENNSQ KGDDGGENSN ENFNNNGSNN KIVSSSEGQS KPKRQMKTPF QLEMLEKAYA  60
LETYPSETTR IELSEKLGLS DRQLQMWFCH RRLKDKKELP VKKARKAPPL LDSPTHEPNP  120
KLILEPCNEY GSGSGSGSSP FARTELRNVV PPPRSYYESP QTIMELRAIA CVEAQLGEPL  180
REDGPILGIE FDPLPPDAFG APLAVAEQQK RPSLAYDSKI YERHEVRTNK AMARTFPEYP  240
FVPNQPSIRS DMFGQLSQPH LYDPMEGPAR TPPFPIGNEH LPRIHGTQSQ SSRARLSSQH  300
DKPVTPYTSP PPFLSQQDKQ SIPYPSPPRD NDVVPKREPH PNIANTGINS QFTDHQIGGQ  360
ENPLALPGGQ VFHNDTVLRV EKKRKTDDAR VVKEVEAYEI RMKKELEKQD ILRRKNEERM  420
RKEMERLDRE RRKEEERMMR ERQREEERLK REQRREIERR EKYMIKEHLR AEKRKQKEEI  480
RKEKEAERRK AALEKANARR IAKESTELIE DEQLELMELA AASKGLSSII HIDLDTLQNL  540
ESFRDSLCVF PPKSVKLKKP FAIQPWINSE QDVGNLLMAG GEVGFKLTFH VWRFLITFAD  600
ALELWPFTLD EFVQAFHDYD SRLLGEIHVA VLKMIIKDIE DVARTPSTGL GVNQNGAANP  660
AGGHPEIVEG AYTWGFDIRN WQKNLNQLTW PEILRQLALS AGFGPQLKKR SITWSCANDK  720
EEGRSGDDVI STLRNGSAAV SAVAKMREKG LLAPRRSRHR LTPGTVKFAA FHVLSLEGPK  780
GLNVLELAEK IQKSGLRDLT TSKTPEASIS VALTRDGKLF ERIAPSTYRV RTAFRQDPAD  840
AESILSEARK KIQIFENGFL AGEDAVDVER EEESESDEVD EDPEDDDLVN PSSGNQNSVQ  900
YDNMDISLVN VKENLANDVD LIQNKLDTDL PCFPENGSKD ADCPTSVTRQ PVACENLNAR  960
NLDDNMEIDE SKSGEPWVQG LTEGEYSDLS VEERLNALVA LVGVANEGNS IRIILEDRLE  1020
AANALKKQMW AEAQIDKVRL KDDYISKLDF PSLAGNKFET QDTYPAVEGN QSPLLDININ  1080
NIKNEASPST AENQRGAPSA QSLLIEKPLV AHDFCPGTGP DNSQSQMHAQ YSKRSRSQLK  1140
SYISHIAEEM YVYRSLPLGQ DRRRNRYWQF VASASSNDPG SGRIFVEHHD GSWRLIDSEE  1200
AFDILLTSLD SRGIRESHLR LMLQKIEKSF KENVRKNTQC TKIGSKGEGS MKTEADETYP  1260
VPEHLSGSGS PSSTLHELNS GTSETSSSFK IELGKSENEK KAALRRYQDF QKWMWKECYN  1320
SSILCAIKFG VKRCKPQVDI CEICLDPYFM EDSHCNSCHQ TFPSNNEFNI SKHTFQCVGN  1380
LSKDIMEHSL PLRTRLLKVL LSCMEASVLS EAFGTIWTTD FRKHWGVKLN KSSTVEELLQ  1440
MLTLFEKALR RDFLSSNFST TDELLGLSSM SKSAAHVSAD PESVALLPWV PLTTAALSLR  1500
LFEFDSSISY VKLERLEPVE EKEATEYIRL PSRYTPFKPN REFEAAALDH NGFTKVKPSA  1560
NKIARSGNKR GRGASDLGRG KKLSKRMYNS KQDIGRRNIK VTENLSQKLK QQGQGTQGQG  1620
GGRGRRTVRK RRVEKRAVED LLLGHAAASH SSKGGREPLR NLDEEWDLEK LSPMTPVHIG  1680
VAENSNSAEE VESDDNAQAV ESDDDALAVE SDDDAQAVEY DHGNWEIGYN GVSPNRWDRD  1740
LVGMSDEDVD NFEDEDNGND NDIGIGIEEN EEEDSEEDVM SEGSDGMLNR VVNVGGSEDV  1800
MSEDSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19097RRLKDKKE
2448454LKREQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.239780.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g014490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1551570.0AC155157.1 Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence.
GenBankAC1584970.0AC158497.2 Medicago truncatula chromosome 2 clone mth2-48e18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631664.10.0homeobox-DDT domain protein RLT1 isoform X2
TrEMBLA0A072VEG10.0A0A072VEG1_MEDTR; Homeobox domain protein
STRINGAES638950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]