PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g015890.1

Common Name

bHLH658, MTR_2g015890

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 217aa MW: 24120.4 Da PI: 9.0026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g015890.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.4e-13	69	115	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+riN +++Lr l+P++ +K++Ka+ L ++++ +k+L Medtr2g015890.1 69 KNHREAERKRRNRINGHLAKLRALVPSS-----PKMDKATLLAEVIRQVKHL 115 58***********************8.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.818	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.24E-12	69	117	No hit	No description
Pfam	PF00010	1.0E-10	69	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-13	70	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-13	70	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-11	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDSSSDISRI LFNATSYRFG ASNETSRGGF VSTNSLVLDS EKGELVKSPP IINGEKKICD 60 ANKTLVALKN HREAERKRRN RINGHLAKLR ALVPSSPKMD KATLLAEVIR QVKHLKKNAD 120 EASKGYSIPT DDDEVKVEPY ENGGSFLYKA SISCDYRPEL LSDLRQTLDK LQLQLALSSV 180 LERASTSMDY SLRTPRPCKQ MQQTSTMSCN HEFCSC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.940	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g015890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN833714	0.0	JN833714.1 Medicago truncatula bHLH658 (bHLH658) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003593769.1	1e-160	transcription factor bHLH106 isoform X2
Refseq	XP_024632329.1	1e-160	transcription factor bHLH106 isoform X2
TrEMBL	G7ILJ0	1e-158	G7ILJ0_MEDTR; BHLH658
STRING	AES64020	1e-159	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr2g015890.1
Entrez Gene	11425915

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Zahaf O, et al. Comparative transcriptomic analysis of salt adaptation in roots of contrasting Medicago truncatula genotypes. Mol Plant, 2012. 5(5): p. 1068-81 [PMID:22419822]