PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g015890.2
Common NameMTR_2g015890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 257aa    MW: 28716.7 Da    PI: 8.1383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g015890.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-1369115354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+riN  +++Lr l+P++     +K++Ka+ L ++++ +k+L
  Medtr2g015890.2  69 KNHREAERKRRNRINGHLAKLRALVPSS-----PKMDKATLLAEVIRQVKHL 115
                      58*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.81866115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.11E-1269117No hitNo description
PfamPF000101.4E-1069115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1370122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1370126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.01E-5151192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDSSSDISRI LFNATSYRFG ASNETSRGGF VSTNSLVLDS EKGELVKSPP IINGEKKICD  60
ANKTLVALKN HREAERKRRN RINGHLAKLR ALVPSSPKMD KATLLAEVIR QVKHLKKNAD  120
EASKGYSIPT DDDEVKVEPY ENGGSFLYKA SISCDYRPEL LSDLRQTLDK LQLQLVREEI  180
STLGDRVKNE FVYTCCKVDI YDIELCPLIA SNVHQALSSV LERASTSMDY SLRTPRPCKQ  240
MQQTSTMSCN HEFCSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.9400.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g015890.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8337140.0JN833714.1 Medicago truncatula bHLH658 (bHLH658) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462544.10.0transcription factor bHLH106 isoform X1
TrEMBLA0A072V5E00.0A0A072V5E0_MEDTR; Transcription factor
STRINGAES640201e-150(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-32bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]