PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g016730.1
Common NameMTR_2g016730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 336aa    MW: 36607.5 Da    PI: 5.6114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g016730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-182272256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ GVr+++ +grWvAeI+d      ++ r +lg+f++aeeAa+a++ a+++l+g+
  Medtr2g016730.1 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDSAEEAARAYDTAARALRGA 72
                     689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.3E-352285IPR001471AP2/ERF domain
PROSITE profilePS5103220.6792279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-282279IPR001471AP2/ERF domain
CDDcd000181.73E-312279No hitNo description
PfamPF008471.4E-122271IPR001471AP2/ERF domain
PRINTSPR003672.2E-72334IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-202379IPR016177DNA-binding domain
PRINTSPR003672.2E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVAQATDNGI RSRKKSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDSAEEAAR  60
AYDTAARALR GANARTNFEL PESETNGSGG SKRGAGSKFM LENTEPFSFE DVSDSGSGSE  120
HGLLGALKAK LFDGKEGKFS FSFPSGSMVT KSTQNCSGKK DSSLSATYCL SQMNEAHANP  180
LPSSLSISSN TFAKSVAIPN NDHEICQTPS MTNMLWSNEM ENEFPWPIQM SHVHENHENS  240
TSMLASGSTS NFAWPLIESN IDMTCMDQGI LNSNRSDQMN MMNMQLPPLI GGASSDGFWT  300
LDQQQQFVQC ENNNSWFGSG GGSWDPLLYV PSELG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1520891280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.231540.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g016730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1378660.0BT137866.1 Medicago truncatula clone JCVI-FLMt-4B14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462605.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLA0A072VEN40.0A0A072VEN4_MEDTR; AP2 domain class transcription factor
STRINGXP_004485926.11e-126(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-18related to AP2 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]