PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g016770.2
Common NameMTR_2g016770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 209aa    MW: 22923.5 Da    PI: 4.9755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g016770.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-302785259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver++ dp+v+ +tY+++Hnh 
  Medtr2g016770.2 27 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkNCPARKQVERNHMDPTVLLVTYTSDHNHA 85
                     69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-312087IPR003657WRKY domain
SuperFamilySSF1182906.02E-262387IPR003657WRKY domain
SMARTSM007747.0E-342686IPR003657WRKY domain
PROSITE profilePS5081130.9742787IPR003657WRKY domain
PfamPF031061.4E-252884IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MYNRRGIKKR VVEIPMKNVE GTNTPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKNCPA  60
RKQVERNHMD PTVLLVTYTS DHNHAVPPPR NYRNTSNNTA SNKDSESEQE PDETFTNIEE  120
NSMIATGDEL GGWFGDVEAI GSPAVLECPI FSEKEVSMLG EEEMSLFADL GELPECSAVF  180
WRGRRSGAGA GASGDVSVGP LVEANCSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1828881675WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118900.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g016770.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462609.11e-153probable WRKY transcription factor 65
SwissprotQ9LP568e-56WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A072V3P21e-153A0A072V3P2_MEDTR; WRKY family transcription factor
STRINGXP_004485928.11e-114(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-57WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]