PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g017720.1
Common NameMTR_2g017720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 433aa    MW: 50932.1 Da    PI: 10.004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g017720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-05342364123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C k F r  nL+ H r H
  Medtr2g017720.1 342 FVCEICLKDFQRDQNLQLHRRGH 364
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077343.2E-8129295IPR006527F-box associated domain, type 1
Gene3DG3DSA:3.30.160.601.9E-4341364IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.221342364IPR007087Zinc finger, C2H2
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MHLKEYNTVK MHLNYQVMKR SARNPNLALP IRKRQKYTTP WFCGVVPIPY QYLIYSRINQ  60
SPLLGYHPRS GFLIGSYNGL LHFREPQNTH KVVAFRPGGL EVKVFNLGDN IRRDIQSLPV  120
IPYFEINEGV YFSGSIHWLA LYNYSHSLYE WAGITIDQFA IIISLNLSTE TYNKLLLPRG  180
FNEVTREVPI LRVLNNHLCF SHEFKGTHLI IWQMTKYGVE ESWNQLLKIS HQNLPSIHPH  240
PYWVPLYFSE TCDYILIFAN KLEDQAILYI WRNNAVERTK IKLKKSMWLY ARDYVEIEGK  300
IEERIESGRI CNLSKIILYA HADPEAEVIS LSPKPLMATN RFVCEICLKD FQRDQNLQLH  360
RRGHNLPWKL KQRTSKKIRK RVYVCPEKIR VHNHPSRALG DLTGIKKHFC RKHGEKKCSK  420
FYVVQSDWKA HS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g017720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405470.0AC140547.18 Medicago truncatula clone mth2-17p16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7ILL90.0G7ILL9_MEDTR; F-box associated protein
STRINGAES640490.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-62C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]