PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g017865.1
Common NameAGa, MTR_2g017865
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29690.3 Da    PI: 9.7066
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g017865.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-312473150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Medtr2g017865.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                     79***********************************************8 PP
2K-box117.11.6e-38921885100
            K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      sg+  ++ea+a+ +qqe++kL+ +i+nLq+++R+++Ge+L+s++ keL++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k
  Medtr2g017865.1  92 SGTGsATEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 185
                      44445899************************************************************************************** PP

            K-box  98 lee 100
                      ++e
  Medtr2g017865.1 186 IAE 188
                      986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6831676IPR002100Transcription factor, MADS-box
CDDcd002656.42E-441791No hitNo description
SuperFamilySSF554556.15E-331788IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-331838IPR002100Transcription factor, MADS-box
PfamPF003191.0E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-335374IPR002100Transcription factor, MADS-box
PfamPF014866.1E-2899186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.219102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDFPNESMSD SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKET IARYKKACSD SSGTGSATEA NAQFYQQEAD KLRVQISNLQ  120
NNNRQMMGES LGSMNAKELK NLESKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAESE RNHSHHSNIN MSMLPGGTNY EPMQSQNQQQ QYESRGYFQV SGLQSSSSQM  240
TALQPSSQYA RQDHMSLQLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A6e-211784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B6e-211784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C6e-211784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D6e-211784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P6e-211684169Myocyte-specific enhancer factor 2B
1tqe_Q6e-211684169Myocyte-specific enhancer factor 2B
1tqe_R6e-211684169Myocyte-specific enhancer factor 2B
1tqe_S6e-211684169Myocyte-specific enhancer factor 2B
5f28_A6e-211684169MEF2C
5f28_B6e-211684169MEF2C
5f28_C6e-211684169MEF2C
5f28_D6e-211684169MEF2C
6c9l_A6e-211684169Myocyte-specific enhancer factor 2B
6c9l_B6e-211684169Myocyte-specific enhancer factor 2B
6c9l_C6e-211684169Myocyte-specific enhancer factor 2B
6c9l_D6e-211684169Myocyte-specific enhancer factor 2B
6c9l_E6e-211684169Myocyte-specific enhancer factor 2B
6c9l_F6e-211684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g017865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1598040.0KF159804.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSa (AGa) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462626.10.0floral homeotic protein AGAMOUS
SwissprotQ435851e-124AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLT2DRL20.0T2DRL2_MEDTR; AGAMOUSa
STRINGXP_004485952.11e-152(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Serwatowska J, et al.
    Two euAGAMOUS genes control C-function in Medicago truncatula.
    PLoS ONE, 2014. 9(8): p. e103770
    [PMID:25105497]
  3. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]