PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g023340.1

Common Name

MTR_2g023340, NF-YC10

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YC

Protein Properties

Length: 245aa MW: 27698.5 Da PI: 7.7602

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g023340.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	144.2	3e-45	64	165	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l +fw+kq +ek+ df+n+ lPlarikki+ka+e v+misaeaP+l++kace+fi+el+ rsw +ae nkr+tl+ksdia+av++ ++fdfl Medtr2g023340.1 64 LGTFWAKQneeVEKVVDFRNNGLPLARIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATRSWANAEVNKRKTLQKSDIASAVSSNEVFDFL 157 6789998889999*************************************************************************** PP NF-YC 93 vdivprde 100 vdivpr++ Medtr2g023340.1 158 VDIVPREN 165 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.74E-28	55	157	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.1E-34	86	163	IPR009072	Histone-fold
Pfam	PF00808	2.4E-20	86	148	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDQKTQVKPE ERRNDTQTQN QIVSVSRPLF HTANASAFSS YMSRVQVQEI SHQQQKQQEL 60 QKKLGTFWAK QNEEVEKVVD FRNNGLPLAR IKKIMKAEEG VSMISAEAPI LFAKACEMFI 120 MELATRSWAN AEVNKRKTLQ KSDIASAVSS NEVFDFLVDI VPRENTMERD IFMGIPRREN 180 VPYYLPMPVH VPPQYAAGPS YGPAGMLMGR HLPNQPPSHP FANQIFPTPK KESDHSTDLP 240 NSDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-42	71	163	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g023340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918302	0.0	JQ918302.1 Medicago truncatula nuclear transcription factor Y subunit C10 (NF-YC10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462829.1	0.0	nuclear transcription factor Y subunit C-2
Swissprot	Q9SMP0	1e-50	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	I3TAY7	0.0	I3TAY7_MEDTR; Core histone H2A/H2B/H3/H4
STRING	XP_004486310.1	2e-57	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1257	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	6e-53	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Medtr2g023340.1
Entrez Gene	25486164

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]