PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g024350.1
Common NameMTR_2g024350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 228aa    MW: 25363 Da    PI: 4.9697
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g024350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72.1e-27866259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     +D ++WrKYGqK++kgs++prsYY+C++  +Cp+++kve++++++++ ++tYegeHnh 
  Medtr2g024350.1  8 KDPWAWRKYGQKPIKGSPHPRSYYKCSTWsDCPARRKVEKCKTQENTYIVTYEGEHNHA 66
                     799***********************9987****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.782268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-28368IPR003657WRKY domain
SuperFamilySSF1182902.75E-24568IPR003657WRKY domain
SMARTSM007742.5E-29767IPR003657WRKY domain
PfamPF031064.1E-23965IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MREDELPKDP WAWRKYGQKP IKGSPHPRSY YKCSTWSDCP ARRKVEKCKT QENTYIVTYE  60
GEHNHAKPTS NKNVVVGTSQ RKSPETGLHS MEEVGSSTNI TNSGSPNVVM LHIDHPESSN  120
AQVLADQSKT PYPEVELLES QSLVVEDVGS SSNVRNLGSH NKMILQFEEP QSSNVTGVVG  180
DSNLPYSETG FIGSFDDNDD ILIPNITTWS EDYLMDFNRL NGVAIFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-163681377Probable WRKY transcription factor 4
2lex_A3e-163681377Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g024350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465575e-41AC146557.33 Medicago truncatula clone mth2-11l13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462897.21e-170probable WRKY transcription factor 35
TrEMBLA0A072V5561e-169A0A072V556_MEDTR; WRKY DNA-binding domain protein
TrEMBLA0A396J3G81e-168A0A396J3G8_MEDTR; Putative transcription factor WRKY family
STRINGAES820691e-54(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1787927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-26WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]