PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g030170.1

Common Name

MTR_2g030170, NF-YA6

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YA

Protein Properties

Length: 208aa MW: 22902.2 Da PI: 7.3888

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g030170.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.3	2.2e-32	112	168	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk+ +++rkpylheSRh hAl+R+Rg+gGrF Medtr2g030170.1 112 EEPVFVNAKQYHGILRRRQSRAKAESEKKV-TRNRKPYLHESRHLHALKRARGCGGRF 168 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-36	110	171	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.026	111	171	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-27	113	168	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-23	114	136	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	116	136	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.2E-23	145	168	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MTSSTHDPTD NEADGQQQSE SQMQPISANG ISHASIDNAQ IVQYAAPPQL GTGHAMAPPP 60 AYPYPDPYYR SIFAPYDAQP YPPQPYGGHP MANLQLMGIQ HAGVPLPTDA VEEPVFVNAK 120 QYHGILRRRQ SRAKAESEKK VTRNRKPYLH ESRHLHALKR ARGCGGRFLN SKKDENQQDE 180 VGSADNSHSN INLNSDRNDL AQSDKQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	111	176	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.12870	0.0	leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g030170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146024	0.0	BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA.
GenBank	JQ918271	0.0	JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003594522.1	1e-153	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	2e-64	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	G7IKU2	1e-151	G7IKU2_MEDTR; CCAAT-binding transcription factor
STRING	AES64774	1e-133	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-50	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Medtr2g030170.1
Entrez Gene	11413865

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]