PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030170.2
Common NameMTR_2g030170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 241aa    MW: 26690.8 Da    PI: 7.6815
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030170.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32145201158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq+Rak+e+ekk+ +++rkpylheSRh hAl+R+Rg+gGrF
  Medtr2g030170.2 145 EEPVFVNAKQYHGILRRRQSRAKAESEKKV-TRNRKPYLHESRHLHALKRARGCGGRF 201
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-36143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.026144204IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-27146201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-23147169IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860149169IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-23178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTSSTHDPTD NEADGQQQSE SQMQPISANG ISHASIDNAQ IVQYAAPPQL GTGHAMAPPP  60
AYPYPDPYYR SIFAPYDAQP YPPQPYGGHP MVRSNILVLI LCNTVVSCQS YFLISIWLNH  120
ILCQANLQLM GIQHAGVPLP TDAVEEPVFV NAKQYHGILR RRQSRAKAES EKKVTRNRKP  180
YLHESRHLHA LKRARGCGGR FLNSKKDENQ QDEVGSADNS HSNINLNSDR NDLAQSDKQP  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21144209166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.128700.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g030170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1460240.0BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA.
GenBankJQ9182710.0JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594522.11e-132nuclear transcription factor Y subunit A-7
TrEMBLG7IKU31e-179G7IKU3_MEDTR; CCAAT-binding transcription factor
STRINGAES647741e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.25e-47nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]