PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030680.1
Common NameMTR_2g030680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 161aa    MW: 18430.1 Da    PI: 9.9314
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.4e-142570752
                     --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
                     +++ q  +Lee F+  +yp+ +++ e+A++lgL+ +qV  WF  +R
  Medtr2g030680.1 25 HSPAQRLRLEEIFQTIKYPTNKQKSEIAEELGLQPKQVNWWFTYKR 70
                     6899**************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.45E-121477IPR009057Homeodomain-like
PROSITE profilePS5007112.731676IPR001356Homeobox domain
SMARTSM003896.6E-61880IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-132370IPR009057Homeodomain-like
CDDcd000861.65E-82466No hitNo description
PfamPF000462.3E-112570IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDLSLGLAPT KNKSSNEEQG AFPRHSPAQR LRLEEIFQTI KYPTNKQKSE IAEELGLQPK  60
QVNWWFTYKR GLVKNATQKE VNAAFRAEIQ MLLEEKREME RQNRVSCQAC RDSRLKQLRL  120
ENELLKEKPS KLNPSCVGKG ELSLELKLGL PQRSSDGTYL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g030680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470102e-86AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594569.34e-86homeobox-leucine zipper protein HDG8
TrEMBLG7IKY81e-112G7IKY8_MEDTR; Homeobox KN domain protein
STRINGAES648191e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2302924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.13e-14homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]