PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030720.1
Common NameMTR_2g030720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 158aa    MW: 18343 Da    PI: 8.681
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.23.8e-152574756
                     --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++ q  +Lee F   +yp++e++ e+Ak+l+L+ +qV  WF  +Ra+ k
  Medtr2g030720.1 25 HSPAQRLRLEEIFLTVKYPTHEQKNEIAKELDLEPKQVNWWFTYKRAQVK 74
                     6899*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-141378IPR009057Homeodomain-like
SMARTSM003895.5E-71880IPR001356Homeobox domain
CDDcd000861.29E-82475No hitNo description
Gene3DG3DSA:1.10.10.604.1E-132479IPR009057Homeodomain-like
PfamPF000461.6E-122574IPR001356Homeobox domain
PROSITE profilePS5007113.1192676IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDLTLRLAPP ENKSSNGEQG AFPRHSPAQR LRLEEIFLTV KYPTHEQKNE IAKELDLEPK  60
QVNWWFTYKR AQVKNATQKE VNAALRAEKE ILLEMMERQK NVFCQACRDS RLKQLRLENE  120
LLKEKLSKLD PSYMGNEELS LELKLGLPQR STDGTYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g030720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470104e-81AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594569.36e-63homeobox-leucine zipper protein HDG8
TrEMBLG7IMI71e-111G7IMI7_MEDTR; Homeobox KN domain protein
STRINGAES648231e-111(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2302924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.12e-15homeodomain GLABROUS 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]