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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Medtr2g034960.1 | ||||||||
| Common Name | MTR_2g034960 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 607aa MW: 67167.3 Da PI: 7.6737 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 86.7 | 2.2e-27 | 211 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++F+ +v+qL G +kA+Pk+i+e+m+v+gLt+e+v+SHLQkYRl
Medtr2g034960.1 211 KPRVVWSIELHQQFMAVVNQL-GLDKAVPKKIMEMMNVPGLTRENVASHLQKYRL 264
79*******************.********************************8 PP
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| 2 | Response_reg | 73.8 | 6.8e-25 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92
vl+vdD+p+ +++l+++l+ y ev+ ++ +e al ll+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a + ++ + + +
Medtr2g034960.1 35 VLVVDDDPTCLMILERMLRFCLY-EVTKCKRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKNVVMKGVTH 126
89*****************9999.***************999999**********************6654.8********************* PP
TESEEEESS--HHHHHH CS
Response_reg 93 GakdflsKpfdpeelvk 109
Ga d+l Kp+ +e+l +
Medtr2g034960.1 127 GACDYLIKPVRIEALKN 143
*************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.5E-163 | 9 | 593 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 1.0E-40 | 32 | 176 | No hit | No description |
| SuperFamily | SSF52172 | 4.98E-35 | 32 | 159 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 4.0E-29 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.503 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 3.6E-22 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.67E-26 | 36 | 148 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 4.1E-29 | 208 | 269 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 9.448 | 208 | 267 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.69E-19 | 208 | 268 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 5.0E-23 | 211 | 264 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.8E-7 | 213 | 263 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 607 aa Download sequence Send to blast |
MKLNNNNNKI SMSTSTSPSN SGNLVSDQFP AGLRVLVVDD DPTCLMILER MLRFCLYEVT 60 KCKRAEVALS LLRENKNGFD IVLSDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKNVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNSWKDLR QSGGLDERDR EKKASTDANY 180 SSSTNEGKSS KKRRDEEDEA DDRDDCSTSK KPRVVWSIEL HQQFMAVVNQ LGLDKAVPKK 240 IMEMMNVPGL TRENVASHLQ KYRLYLRRLS GVSQQQSNLN NSFMSAQESI FGGTSVNEID 300 LQTLSASGQF SAQSLAKLQA AGLYSPENSK LRFGDGQLQH MSSSKPVNFL HGIPINIEPK 360 QFANFHQSAQ SFGSANMRVN ASAAKRSPWL TQMAQSQPRG QVLNENTNSH ATMFPSSLMQ 420 PTGPNGISVN SFPLRCTSGI SSSSTKGAFH AEATSGIKGL GGFSYDVYNE LHRKSNDWGL 480 ANTGLTYDGS QHSNTLQGNI DVSPSILGHR GFSSIQQTRQ NRDGMSQGDH QNVGQHLNTP 540 FVDNSLRGKS ERIPGTNIEI NPFSDQSQED LMSVFLNQHK GIGQVDNEFD FDGYSIDNIP 600 VYNRSC* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-21 | 207 | 270 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mtr.26070 | 0.0 | root | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Medtr2g034960.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT135081 | 0.0 | BT135081.1 Medicago truncatula clone JCVI-FLMt-22G12 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_003594816.1 | 0.0 | two-component response regulator ARR2 | ||||
| Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | G7IMX2 | 0.0 | G7IMX2_MEDTR; Two-component response regulator | ||||
| STRING | AES65067 | 0.0 | (Medicago truncatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 1e-176 | response regulator 2 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Medtr2g034960.1 |
| Entrez Gene | 11420048 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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