PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g038040.1
Common NameMTR_2g038040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 245aa    MW: 27823.6 Da    PI: 4.6617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g038040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-135597754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI+ L
  Medtr2g038040.1 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQLL 97
                     67*********************66......***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7324897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.03E-1351102No hitNo description
SuperFamilySSF474599.29E-1851114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-1454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1654113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-105597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.41E-5166234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MENIGDEYKH YWETNMFFQT QELDSWGLDE ALSAYYDSSS PDGAASSGVS SKNIVSERNR  60
RKKLNERLFA LRAVVPNISK MDKASIIKDA IEYIQLLHEQ EKVIQAEIME LESGMPNNIN  120
PSYDFDQELP MLLRSKKKRT DQLYDSVSSR NFPIEVLELR VTYMGENTMV VSLTCNKRAD  180
TMVKLCEVFE SLKLKIITAN ITSFSGRLLK TVFIEANEED KDQLQTNIQT AIAALNDPLS  240
PMSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.125870.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g038040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1396080.0BT139608.1 Medicago truncatula clone JCVI-FLMt-13I5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595077.10.0transcription factor bHLH35 isoform X1
SwissprotQ2HIV92e-92BH035_ARATH; Transcription factor bHLH35
TrEMBLG7IG901e-180G7IG90_MEDTR; Putative transcription factor bHLH family
STRINGAES653280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-83bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]