PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g038720.1
Common NameMTR_2g038720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 298aa    MW: 33738.7 Da    PI: 8.3926
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g038720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.1e-19166199134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Medtr2g038720.1 166 CTDCHTTKTPLWRSGPTGPKSLCNACGIRQRKAR 199
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-19160211IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-13160200No hitNo description
PROSITE profilePS5011413.007160196IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.2E-16164199IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.55E-11165193No hitNo description
PfamPF003208.4E-17166199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MIPTYRYSAS SPPMPFFDLN NEDHNHHLFT TNQQATSSSS SLSYSILFNQ NQDQTNSYSW  60
ESNHILSDGV EVKNFVPSSE SWDHQEVEKD AKDWKKEEDN ENFRDEGRIS MKWMPSKKRM  120
IKRMMEDQRA SEQEFEKQIK QLSPNLVGTE DSSNNNFSNN STVRVCTDCH TTKTPLWRSG  180
PTGPKSLCNA CGIRQRKARR ALAAAANGET LVVAEKPYVK GKKLQIKRKR SKTDQCAQLL  240
KRKGKSENKC NNFEDLITSW SNNLASHQVF PQDVKEAAIL LMALSSGLLN GCSSDEC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245LKRKGKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.176280.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g038720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431600.0BT143160.1 Medicago truncatula clone JCVI-FLMt-17G17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595135.20.0putative GATA transcription factor 22
TrEMBLG7IIE30.0G7IIE3_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES653860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-24cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]