PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g039370.1
Common NameMTR_2g039370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 297aa    MW: 35340.7 Da    PI: 10.1295
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g039370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.71.2e-151001682090
             FAR1  20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      ++ ++ + +  ++f+Csk+g++++e +   + + + + +rt+Cka+++ + +k+g+w++tkl+l+HnH ++
  Medtr2g039370.1 100 YYDNERKMTRFKEFYCSKQGFKNNEYEG--EVSYEGVDSRTNCKAMVRFNVSKEGVWKITKLVLDHNHVFV 168
                      555666778899************9988..889999********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-12101168IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVVKVDTEGN IIKEFGDNNF VTSTIEFEDR LYLGSIKTDF VEKFSLQSEK MISMNLNRLK  60
LMGQKKFFLV KLSITKMKLI TYTKNMPSER VLVWERGELY YDNERKMTRF KEFYCSKQGF  120
KNNEYEGEVS YEGVDSRTNC KAMVRFNVSK EGVWKITKLV LDHNHVFVSG ELPLIHKSKT  180
RKSWSWKKNK SRVDQKITEN KDKNLYDLFV PENLLSTRRR RESINDNENQ IKNVSQVLAK  240
NKDLDSETKK LMNFKLFLWP NYRLEDLACI NRYWFNTHNG SHFSILRIHM YPRLKD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.221241e-119flower| glandular trichome| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g039370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487750.0AC148775.2 Medicago truncatula chromosome 2 clone mth2-62i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7IIJ00.0G7IIJ0_MEDTR; FAR1 DNA-binding domain protein
STRINGAES654330.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-06FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]