PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g043030.1
Common NameMTR_2g043030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 203aa    MW: 22343.9 Da    PI: 4.4671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g043030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.2e-171767155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr +k +g++v+eIr p++   r+r++lg++++a +Aa+a +aa+ +l+g
  Medtr2g043030.1 17 SLYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSAVKAARAFDAAMFCLRG 67
                     57*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-191776IPR016177DNA-binding domain
CDDcd000181.16E-281777No hitNo description
Gene3DG3DSA:3.30.730.107.1E-281876IPR001471AP2/ERF domain
PROSITE profilePS5103220.1391875IPR001471AP2/ERF domain
SMARTSM003806.3E-301881IPR001471AP2/ERF domain
PfamPF008471.2E-91867IPR001471AP2/ERF domain
PRINTSPR003671.9E-81930IPR001471AP2/ERF domain
PRINTSPR003671.9E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVKSNVEKTA VERSDSSLYR GVRKRKWGKY VSEIRLPNSR QRIWLGSYDS AVKAARAFDA  60
AMFCLRGSGA KFNFPNDPPY IAGGRSMTHA EIKTAAASFA NSGQPENTPF ETPSSSEGTA  120
TTLLSMELLS PALSDVTVQT DCNSKENGLF SDMFSETGSG YSMFPGFDDF CGDFYVPEMS  180
DFDYVEENMD GLVIPDLFLW NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1514771074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.92050.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g043030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595362.11e-150ethylene-responsive transcription factor ERF017
TrEMBLG7IIR21e-148G7IIR2_MEDTR; Ethylene-responsive transcription factor ERF017-like protein
STRINGAES656131e-149(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-51ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]