PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g043040.1
Common NameMTR_2g043040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 231aa    MW: 25537.4 Da    PI: 4.3819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g043040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-161767155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr +k +g++v+eIr p++   r+r++lg++++  +Aa+a +aa+ +l+g
  Medtr2g043040.1 17 SLYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSDVKAARAFDAAMFCLRG 67
                     57*****999.**********933...5**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-181776IPR016177DNA-binding domain
CDDcd000183.62E-271777No hitNo description
SMARTSM003808.3E-301881IPR001471AP2/ERF domain
PfamPF008471.3E-91867IPR001471AP2/ERF domain
PROSITE profilePS5103219.9941875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-271876IPR001471AP2/ERF domain
PRINTSPR003671.2E-71930IPR001471AP2/ERF domain
PRINTSPR003671.2E-74157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVKSNMEKIA VERSDSSLYR GVRKRKWGKY VSEIRLPNSR QRIWLGSYDS DVKAARAFDA  60
AMFCLRGSGA KFNFPNDPPE IAGGRSMTHS EIKTAAARFA NSGQVNNEYS GQPDNSTIET  120
PSWSQGTTFL PMDGVSTCYT QVETPSLLEG TTTTLLSSPA LSDVTVQTDS DLGENGLCKD  180
LFSETGLGYT MFPGFYDFCG DFYVPELTNF AYEEENMDGL IIQDSFLWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1414771074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.92051e-105stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g043040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595363.11e-173ethylene-responsive transcription factor ERF018
TrEMBLG7IIR31e-171G7IIR3_MEDTR; Putative transcription factor AP2-EREBP family
STRINGAES656141e-172(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.17e-45ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]