PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g043050.1
Common NameMTR_2g043050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 215aa    MW: 23550 Da    PI: 4.446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g043050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-181767155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr +k +g++v+eIr p++   r+r++lg++++ae+Aa+a +aa+ +l+g
  Medtr2g043050.1 17 SLYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSAEKAARAFDAAMFCLRG 67
                     57*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-201776IPR016177DNA-binding domain
CDDcd000181.23E-281777No hitNo description
PROSITE profilePS5103220.9821875IPR001471AP2/ERF domain
SMARTSM003803.3E-321881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-281876IPR001471AP2/ERF domain
PfamPF008477.2E-111867IPR001471AP2/ERF domain
PRINTSPR003672.4E-91930IPR001471AP2/ERF domain
PRINTSPR003672.4E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVKSNVEKPT TERSDSSLYR GVRKRKWGKY VSEIRLPNSR QRIWLGSYDS AEKAARAFDA  60
AMFCLRGSGA KFNFPNDPPN IAGGRTMTPS EIQAAAARFA NSGVHIENSG QPGNVAVEYE  120
SSSEGTALLA MESEALSPAM SDATVQTDYD SKQNGLFSDL FAVDGSGRFE PDYSVFPGFD  180
DFGGNFYVPD MPIYDYGEEN LDGLVIHDSF LWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1614771074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.142890.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g043050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1457370.0BT145737.1 Medicago truncatula clone JCVI-FLMt-4F8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463568.11e-158ethylene-responsive transcription factor ERF017
TrEMBLI3SZ391e-157I3SZ39_MEDTR; Ethylene-responsive transcription factor ERF017-like protein
STRINGXP_004488106.11e-109(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-54ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]