PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g045020.1
Common NameMTR_2g045020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21673.6 Da    PI: 8.3132
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g045020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.42.5e-1036651544
                     HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstg 44
                      Rr gi+ KA ELS+LC+ + a+i+ s++ 
  Medtr2g045020.1 36 ERRLGIFNKAIELSILCQSKTAIIVKSPNK 65
                     59************************9863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00172174IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-102484IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.0213664IPR002100Transcription factor, MADS-box
PfamPF003191.0E-73768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNKNCELSEE RKNAGTKLNN TRKRKMHEIK KLDEKERRLG IFNKAIELSI LCQSKTAIIV  60
KSPNKNKFYA CGYPCDSVIQ RFLTGRMMVE DGKKKKEDDD IAKTLRLQYE ALQEKLEEEE  120
DNLKSLKVTE SQKSDFNVHD WWNNSIDDMD LASLEDFKNS LDSFKNNLRA ASQAEKSNLH  180
PNLNIAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025TRKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g045020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595402.11e-135agamous-like MADS-box protein AGL29
TrEMBLA0A396JBD21e-134A0A396JBD2_MEDTR; Putative transcription factor MADS-type1 family
STRINGAES656531e-135(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-10AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]