PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g045360.1
Common NameMTR_2g045360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 430aa    MW: 48044.9 Da    PI: 7.7017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g045360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.8e-29211269259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+ kg+++pr+YYrC++  +Cpv+k+v+r+ +d++v+++tYeg+Hnh+
  Medtr2g045360.1 211 VDGCQWRKYGQKTAKGNPCPRAYYRCSMGtSCPVRKQVQRCFKDESVFITTYEGNHNHQ 269
                      59**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-31195271IPR003657WRKY domain
SuperFamilySSF1182902.09E-26204271IPR003657WRKY domain
PROSITE profilePS5081128.151205271IPR003657WRKY domain
SMARTSM007742.1E-33210270IPR003657WRKY domain
PfamPF031061.7E-25212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEEKIQTMKL LELDERPPYD DNNKDLQNKI DEPSSFHKNT PGSTLLLSLS LNNTTQPPHQ  60
IQGEPQIQIG NIRVKLDEAK KENENLRGML NLVNDRCNVL QNRLLLAMHM HQSSSLSQNN  120
HNLLLKENTQ DAGKSVLPTR QFFDEPSPSN CSKNNGFAIV ENNENNMGRN LACEYINEGE  180
INSKIEDQSS EVGCRRARVS IRARSDFAFM VDGCQWRKYG QKTAKGNPCP RAYYRCSMGT  240
SCPVRKQVQR CFKDESVFIT TYEGNHNHQL PPAAKPIANL TSSALNTFLP TSSTTLQQYG  300
NNLTNTFLFS SPLSPPNSNA IATFSPSPTC PTITLDFTLP PSNYLQFKNH KQSSLLPFPF  360
QGHYNQSFEV FPNMINNERK LALVDVVSEA LEKDPSLKEA LFSAMSSFTN GDSSNIINKQ  420
SQLPSKSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21197273176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.96870.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g045360.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595431.20.0probable WRKY transcription factor 47
TrEMBLG7IQG10.0G7IQG1_MEDTR; Putative transcription factor WRKY family
STRINGAES656820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-50WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]