PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g045630.1
Common NameMTR_2g045630
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 279aa    MW: 31121.2 Da    PI: 5.2577
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g045630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.84.1e-07197253363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+++er++ +NR +A+rs    k+e+ee  +k+ +L+  N+ L ++l el++++ +l++e+
  Medtr2g045630.1 197 EIRKERKRLSNRKSAQRS----KKECEEQCQKINTLKDGNSVLTQTLAELSEKCLELTNEN 253
                      577888888888888766....899********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-4192250No hitNo description
SMARTSM003380.0042195255IPR004827Basic-leucine zipper domain
CDDcd147023.21E-9200246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MQLSFVLFYI TYKVRRISLL LKTLSHSFFP SLLLLANNAL LQYDALHDPT ELSYNPRVAK  60
DAAKAFSGIV RERNLEFNIL GTINSEPVLS LMTGEFTKYG NQSSAPKHDR DGTLMSAASG  120
SKRSTNADQD DSNEDSPLSM KKRSNMIIGD VHLANSLAPC FFVENPSGMA QNLGTVVKES  180
DNDIDVDAQL KNMEVDEIRK ERKRLSNRKS AQRSKKECEE QCQKINTLKD GNSVLTQTLA  240
ELSEKCLELT NENDSIEEEL VKEYGPESIA DLLHMKPI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KVRRISL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g045630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453721e-88AC145372.8 Medicago truncatula clone mth2-5f4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632766.11e-180G-box-binding factor 1
TrEMBLG7IST50.0G7IST5_MEDTR; Uncharacterized protein
STRINGAES657010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149401013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.25e-11G-box binding factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]