PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g045670.1
Common NameMTR_2g045670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 282aa    MW: 31556.9 Da    PI: 4.923
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g045670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35e-11196256363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+++er++ +NR +A+rs  +K++e ee  +k+ +L+ eN+ L  +l el++++ +l++e+
  Medtr2g045670.1 196 ERRKERKRLSNRKSAKRSKIKKQKEYEEQCQKINTLKDENSVLTHTLTELSEKCLELTDEN 256
                      789******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-7190253No hitNo description
SMARTSM003386.0E-7193258IPR004827Basic-leucine zipper domain
PfamPF001704.6E-8196256IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588196259IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.9E-7198253No hitNo description
CDDcd147022.75E-15199249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLDGIQISGS SGFTSFTSLM GKKESIPFGR AYNFLVPQDQ TPNNPMLPHC DTTMQVQNFF  60
FSEPVCDGIF GHVAAQAFSE MVHRRNPDFN KLFARNSKPD SSLMTGESRE YGNQSSSPKN  120
DRDGTSMSAT SGSMRSADGD QDDSNKDSPL SKKQKSNMIT EDENPSGLAQ NLGTAVKESD  180
TDLDVDTQLK NMEDDERRKE RKRLSNRKSA KRSKIKKQKE YEEQCQKINT LKDENSVLTH  240
TLTELSEKCL ELTDENDSIE EELVRMYGPE SIADLLHMKP T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195203ERRKERKRL
2196218RRKERKRLSNRKSAKRSKIKKQK
3210216KRSKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g045670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453724e-88AC145372.8 Medicago truncatula clone mth2-5f4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632767.11e-132G-box-binding factor 1
TrEMBLG7IST90.0G7IST9_MEDTR; BZIP transcription factor
STRINGAES657050.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149401013
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]