PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g059540.1

Common Name

MTR_2g059540

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Dof

Protein Properties

Length: 207aa MW: 23289.6 Da PI: 8.1788

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g059540.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.4e-38	30	87	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg++k+kks+ Medtr2g059540.1 30 ALKCPRCNSFNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGILRNVPVGGGSQKSKKSK 87 689***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.1E-33	31	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.845	31	85	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-24	31	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MADGNLFCIE EDRRMKTYHN QNNHHHHHLA LKCPRCNSFN TKFCYYNNYN LSQPRHFCKN 60 CRRYWTKGGI LRNVPVGGGS QKSKKSKTAS SSSIPSSAAT TPTPLQPEAD KSDSHSNSDG 120 STIRVNSVIE NEQVNSFRNL IISSSTNDQV HVVQHGDSVM LNHQQFSNEF GSLDWEGGAN 180 TVDQSYWTQS HWSDHVIHSS SLFHLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g059540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136450	0.0	AC136450.7 Medicago truncatula clone mth2-34d6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003595715.2	1e-154	dof zinc finger protein DOF5.4
TrEMBL	A0A396JAA5	1e-153	A0A396JAA5_MEDTR; Putative transcription factor C2C2-Dof family
STRING	AES65966	1e-154	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-32	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Medtr2g059540.1
Entrez Gene	11413199

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]