PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g062310.1
Common NameMTR_2g062310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 428aa    MW: 48044.6 Da    PI: 8.2187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g062310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016375394323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C+ CgksF  ++ +++H++++
  Medtr2g062310.1 375 CSQCGKSF-KPEKMHKHMKSC 394
                      ********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061364.1E-4012305IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
METKGGEVRR LHIIYFLSHM GGHAEHPHLI RVLHLARNGV YLRDIKRWLG EVRGRDLPES  60
FAWSYKRRYK SGYVWQDLMD DDLITPISDN EYVLKGSQIH TTPFETQSIN STINEKKTDT  120
DEAVQVEEDK QKQERKPSLS EEESEIQKET DSKKNDLNHV SSEISQDSLV FSSDRSSVTD  180
DDSSFKVEEE KLLGNGKEGC LSEKNHDKLD SFSFPSLYHN LMSKKGKKDG QNNKTDTTTP  240
PDSTFSTPTS STSAQSQSSF TKIRSNSVRV TSVFRNWIGC GTVATNDAAF VSMNPAKKIA  300
PKELTNMPEK RAEICKGDKL GGSARCFGTP WNYHDQNEHN GARKSCDGDE IIKSRKKLSE  360
LMSQTSYKPF GGPICSQCGK SFKPEKMHKH MKSCKGMKGM GTSATTIAEE TQLHRSTSSS  420
KDYLLQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g062310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558800.0AC155880.3 Medicago truncatula chromosome 2 clone mte1-55i22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595830.20.0uncharacterized protein LOC11443739
TrEMBLG7IQN50.0G7IQN5_MEDTR; DUF966 domain protein
STRINGAES660810.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83781620
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]