PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g062330.1
Common NameMTR_2g062330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 146aa    MW: 17049.4 Da    PI: 6.2299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g062330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.6e-1349128686
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      + s    ++ l +p++ ae++ +++ +  ++ l de+g+s++  +   +k+  + ++++GW +Fv +++Lk+gD+++F++++
  Medtr2g062330.1  49 IASILDGNNVLHFPRRVAENCLYIN-Q-SKILLFDEDGKSYDCDVHTtSKNMHQKYIGRGWYNFVLEKDLKVGDVILFTVNN 128
                      556666788999******9996664.3.38**************954466666699**********************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1641129IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.48944141IPR003340B3 DNA binding domain
SMARTSM010190.008245139IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-1346127IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-948125No hitNo description
PfamPF023622.3E-1155127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAAESFNLFG KRLLLKEHFL YEKIGVEVNG TELWNVQNVD VHYWKHKVIA SILDGNNVLH  60
FPRRVAENCL YINQSKILLF DEDGKSYDCD VHTTSKNMHQ KYIGRGWYNF VLEKDLKVGD  120
VILFTVNNPP NQVYATVVNW DWDWD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g062330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558801e-144AC155880.3 Medicago truncatula chromosome 2 clone mte1-55i22, complete sequence.
GenBankAC1667451e-144AC166745.4 Medicago truncatula clone mth2-193e13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7IQN71e-103G7IQN7_MEDTR; B3 DNA-binding domain protein
STRINGAES660831e-104(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-07B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]