PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g064090.1
Common NameMTR_2g064090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 347aa    MW: 39985.1 Da    PI: 4.9033
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g064090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.78.8e-5761331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp+   + +++ ewyf+s+rd+ky++g+r+nrat+ gyWkatgkd++v
  Medtr2g064090.1   6 LPPGFRFHPTDEELVAYYLERKITGRTIEL-DIIAEVDLYKCEPWDLPErsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAV 98 
                      79****************************.99**************94345566888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s ++++vg+kktLv+ykgrap+g +t+Wvmheyrl
  Medtr2g064090.1  99 NS-QKKQVGMKKTLVYYKGRAPHGIRTNWVMHEYRL 133
                      *9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-643157IPR003441NAC domain
PROSITE profilePS5100560.5756157IPR003441NAC domain
PfamPF023652.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAPMTLPPGF RFHPTDEELV AYYLERKITG RTIELDIIAE VDLYKCEPWD LPERSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRGGYWK ATGKDRAVNS QKKQVGMKKT LVYYKGRAPH  120
GIRTNWVMHE YRLIESHPGA SLSSLKDSYS LCRIFKKTIQ IPTKTNEEEQ VKDTKKEMTV  180
FEEQVQGEDS SGGTEISREI MQTMDEKILN HDEHPKFLCD ASSSDVTQGT CTPTETCNNI  240
MTEDIHAQFA YDEENSSAIS YPMGISYPSN LFQDIEIPMY GFYNQFPQTP LMMEDFSQME  300
TKSIMKPDIS QDCFLYDKYR DCMNGTLEEI ISLCSSQDHS VAFPMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-58115715168NAC domain-containing protein 19
3swm_B1e-58115715168NAC domain-containing protein 19
3swm_C1e-58115715168NAC domain-containing protein 19
3swm_D1e-58115715168NAC domain-containing protein 19
3swp_A1e-58115715168NAC domain-containing protein 19
3swp_B1e-58115715168NAC domain-containing protein 19
3swp_C1e-58115715168NAC domain-containing protein 19
3swp_D1e-58115715168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g064090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494920.0AC149492.14 Medicago truncatula clone mth2-99d10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595952.10.0NAC domain-containing protein 96
TrEMBLG7IGW30.0G7IGW3_MEDTR; NAC transcription factor-like protein
STRINGAES662030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.13e-99NAC domain containing protein 20
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]