PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g067740.1
Common NameMTR_2g067740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 215aa    MW: 24071.8 Da    PI: 8.6754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g067740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-056183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C+k F+++  L  H++ H
  Medtr2g067740.1 61 YPCKFCNKKFPSSQALGGHQNAH 83
                     99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-55387IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.69E-75888No hitNo description
PROSITE profilePS5015711.3236188IPR007087Zinc finger, C2H2
PfamPF139121.0E-66185IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSETLRFGDG VTRENKKLKR KMDDANIDAD SDVLLSLSVG GGGSGRSSFK PLKSHEEQRE  60
YPCKFCNKKF PSSQALGGHQ NAHRRERVLS RIEKEIQLRT FGLGVHHFFP YSNHHQYPFI  120
VAGSSPLYHG VGWPQFVSPA IYGNSIGMII NSAWPTQTPL NNNVGFENYQ HNDHLQVPSF  180
NVALNSHVVM VNNNHYEPND NQNSSSFPDS SFKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g067740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464277.11e-160zinc finger protein 3
TrEMBLA0A072V9371e-158A0A072V937_MEDTR; C2H2-type zinc finger protein
STRINGXP_004514908.18e-43(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.12e-13zinc finger protein 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]