PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g068920.1
Common NameMTR_2g068920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 292aa    MW: 33721.6 Da    PI: 6.4389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g068920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.21.6e-49231513128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv++yL++k+++k++ + + ik++diyk++PwdLp  ++ + eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+++s+
  Medtr2g068920.1  23 PGFRFHPTDEELVTFYLRRKLDKKPIAI-DLIKQIDIYKYDPWDLPkVNIPGAEKEGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSN 115
                      9**************************9.99***************55777899999************************************8 PP

              NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++  vglkktLv+y+g+a kg+ktdW+mhe+rl
  Medtr2g068920.1 116 gaeGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRL 151
                      6655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5318184IPR003441NAC domain
PROSITE profilePS5100551.33921185IPR003441NAC domain
PfamPF023653.8E-2523151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGMNEDFNMD NEYVVDDDDV PLPGFRFHPT DEELVTFYLR RKLDKKPIAI DLIKQIDIYK  60
YDPWDLPKVN IPGAEKEGYF FCQRGRKYRN SVRPNRVTGS GFWKATGIDK AIYSNGAEGN  120
DCVGLKKTLV YYRGSAGKGT KTDWMMHEFR LPSNIDAKTN ISYPRNDADY AHEAEIWTLC  180
RILKRNVSQR KQIPEMKQLA NKLQSVHNTS TRMDNNMEFN INQQTYINFG ASHEHHHVHE  240
DKPVNNYTSS DQSNQFHGSN QFHEDANELL PFDNWDELGS VVRFAVDSPS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-472319119171NO APICAL MERISTEM PROTEIN
1ut4_B9e-472319119171NO APICAL MERISTEM PROTEIN
1ut7_A9e-472319119171NO APICAL MERISTEM PROTEIN
1ut7_B9e-472319119171NO APICAL MERISTEM PROTEIN
4dul_A9e-472319119171NAC domain-containing protein 19
4dul_B9e-472319119171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g068920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596155.20.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLG7IH020.0G7IH02_MEDTR; Putative transcription factor NAM family
STRINGAES664060.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]