PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g070590.1
Common NameMTR_2g070590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 122aa    MW: 13892.8 Da    PI: 9.9091
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g070590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.32.5e-2331120190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fYneY+k++GF + +++ +ks  +g  t+r+f+C keg r   k++ + + ++rae rtgC a++++++++  +k++v ++  eHnH+l+
  Medtr2g070590.1  31 EFYNEYSKRIGFGIHREYGNKSIVDGVLTSRRFTCFKEGVRGVGKRH-QPKGEPRAEIRTGCLARMVISLDQkIEKYKVVDFIAEHNHHLQ 120
                      6******************************************9999.99*********************999**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1931120IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MNKNVQRGQG SIANNVPHLE MKFDSEAAAY EFYNEYSKRI GFGIHREYGN KSIVDGVLTS  60
RRFTCFKEGV RGVGKRHQPK GEPRAEIRTG CLARMVISLD QKIEKYKVVD FIAEHNHHLQ  120
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g070590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350211e-164AC235021.3 Medicago truncatula strain A17 clone WTSI_1018-172G23, complete sequence.
GenBankAC2397171e-164AC239717.2 Medicago truncatula strain A17 clone WTSI_1018-144o6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626525.13e-70protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024636480.12e-72protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072V9E33e-85A0A072V9E3_MEDTR; FAR1 DNA-binding domain protein
STRINGXP_004497702.18e-52(Cicer arietinum)
STRINGXP_004503202.13e-50(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.28e-18FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]