PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g075690.1
Common NameMTR_2g075690
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 301aa    MW: 34935.3 Da    PI: 5.4548
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g075690.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY621.1e-19141201259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK+ +++++ r+YYrC++    +C++ k+v+r +e+p +  +tY ++H+++
  Medtr2g075690.1 141 DDGHTWRKYGQKMLTNAKYFRNYYRCAHMydqHCEAIKHVQRIQENPPLYRTTYYDHHTCK 201
                      8**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-21129201IPR003657WRKY domain
PROSITE profilePS5081118.372135203IPR003657WRKY domain
SuperFamilySSF1182901.57E-20137201IPR003657WRKY domain
SMARTSM007748.3E-29140202IPR003657WRKY domain
PfamPF031062.5E-19141201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MENQLLLPTN YGKKAMEEEL IRGRDMANQL LEVLTFDDKS NIREVKGSNI VAEDLVLEVL  60
KSLTNTLLML NNGKESNDMA VPTTPTTIRD FSFSSNCPKM EEDLDRGYKK FETLNTKNPK  120
GSNKRKSSAP TWEKTASILI DDGHTWRKYG QKMLTNAKYF RNYYRCAHMY DQHCEAIKHV  180
QRIQENPPLY RTTYYDHHTC KSSYHSDIKL ESILCYDDSS ILLSFDNNIS SEQEFPFRPR  240
PPSPQLPLLA STKEEPKEEI HNDRFPRDQL LPSENLQLCD FDVYFDYLRD VSELSSIESF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-18140201869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g075690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1477130.0AC147713.21 Medicago truncatula clone mth2-138b11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596300.10.0probable WRKY transcription factor 62
TrEMBLG7IR300.0G7IR30_MEDTR; Putative transcription factor WRKY family
STRINGAES665510.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-25WRKY DNA-binding protein 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]