PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g075750.1
Common NameMTR_2g075750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 184aa    MW: 21537.2 Da    PI: 6.7134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g075750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.72.3e-232888259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                     +Dgy+WrKYGqK++ ++++ rsYYrC+++   +C++ k+v+r +edp +  ++Y g+H ++
  Medtr2g075750.1 28 EDGYEWRKYGQKKIINAKYLRSYYRCSYKsdeECEAMKHVQRIQEDPPLYRTIYYGHHSCK 88
                     8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-242188IPR003657WRKY domain
PROSITE profilePS5081119.7722290IPR003657WRKY domain
SuperFamilySSF1182901.44E-222488IPR003657WRKY domain
SMARTSM007741.4E-312789IPR003657WRKY domain
PfamPF031064.3E-232888IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSHHLVEYFT LIRSKALTWE KDSSILIEDG YEWRKYGQKK IINAKYLRSY YRCSYKSDEE  60
CEAMKHVQRI QEDPPLYRTI YYGHHSCKIS LSNSEITLLE PNNTSSMFLS FNDNLQIKEQ  120
YPAFSSPLSV PTKQEPIDAI NPYHNQLTSS DYPFSCDYKL EFDNFRHATM LSSTKSVPFH  180
DGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-172788869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g075750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1477130.0AC147713.21 Medicago truncatula clone mth2-138b11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632081.11e-109probable WRKY transcription factor 70
TrEMBLG7ITD81e-134G7ITD8_MEDTR; WRKY family transcription factor
STRINGAES665561e-128(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-25WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]