PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g076780.1
Common NameMTR_2g076780
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 238aa    MW: 26697.6 Da    PI: 7.3704
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g076780.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.47.3e-283687557
      ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     ++keC+kNhA s+Gg+a+DGCgEf+p+ g egt++ ++CaAC+CHRnFHRre+
  Medtr2g076780.1 36 NFKECRKNHASSIGGYALDGCGEFLPA-GIEGTIEFFTCAACNCHRNFHRREN 87
                     79************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-172586IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.2E-253687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.9413786IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-263786IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.03E-17160233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-26164236IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-23174230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MANITEPTSY VETTTTSNDH VEETLMNSQS NSFERNFKEC RKNHASSIGG YALDGCGEFL  60
PAGIEGTIEF FTCAACNCHR NFHRRENGVV NEENISLPFN NPRFPQPTPF STVFQTPTGY  120
HHVTGTSRGT TTSLPSSVVH DEAHFPRGYL GEGAVEPIYH GDTYSGGEGS SKSKKRFRSK  180
FTHDQKERML GFAMKSGWKI HKQDENVVEE FCNEIGVKCK TFRVWMYNNK HTLGNKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-171742321775ZF-HD homeobox family protein
1wh7_A2e-171752321875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g076780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1254740.0AC125474.16 Medicago truncatula clone mth2-16l11, complete sequence.
GenBankAC1523520.0AC152352.12 Medicago truncatula clone mth2-77a17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596393.21e-179zinc-finger homeodomain protein 1
SwissprotA2Z2591e-49ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A396JIQ81e-178A0A396JIQ8_MEDTR; Putative transcription factor ZF-HD family
TrEMBLG7IH791e-178G7IH79_MEDTR; Homeobox domain, ZF-HD class protein
STRINGAES666441e-178(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.17e-41homeobox protein 21
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]