PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g081600.1

Common Name

MTR_2g081600, NF-YC6

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YC

Protein Properties

Length: 120aa MW: 13028 Da PI: 7.3621

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g081600.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	105.7	2.9e-33	21	102	19	99
NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k edvkmis aP+++skacelfi elt rsw+ a ++krrtl+k d+a+av tdifdfl+ v ++ Medtr2g081600.1 21 HSLPLARIKKIMKNsSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKEDVASAVIATDIFDFLITLVSNS 102 99********96269*********************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.79E-27	15	95	IPR009072	Histone-fold
Pfam	PF00808	8.2E-20	22	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.1E-30	23	100	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MRQAGAYSGI LNGGIGRTGP HSLPLARIKK IMKNSSEDVK MISGVAPIVF SKACELFIEE 60 LTRRSWIMAI DAKRRTLNKE DVASAVIATD IFDFLITLVS NSDSTDDTTV MQMETMNSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-30	21	99	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g081600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136138	0.0	AC136138.30 Medicago truncatula clone mth2-8f9, complete sequence.
GenBank	JQ918298	0.0	JQ918298.1 Medicago truncatula nuclear transcription factor Y subunit C6 (NF-YC6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003596534.1	3e-83	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0	1e-31	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	G7ITK9	7e-82	G7ITK9_MEDTR; Nuclear transcription factor Y protein
STRING	AES66785	1e-82	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10559	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-34	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Medtr2g081600.1
Entrez Gene	11410869

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]