PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g084815.2
Common NameMTR_2g084815
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 303aa    MW: 32646.5 Da    PI: 4.4387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g084815.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00026277299223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C+k+F++   L++H +  H
  Medtr2g084815.2 277 SCSSCSKTFNSETGLTQHSKAkH 299
                      7*****************88767 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.99276302IPR007087Zinc finger, C2H2
PROSITE patternPS000280278299IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFWGAEVKV GETIKIDPYD LEAAAIHISQ VALGEAKKDK PNESVVIYLK VGEQKLVLGT  60
LTKDKIPQIS LDIVLEKEFE LSHNSKAASV HFCGYKAYYE DNDDSEEEGE TDSEDEDIPL  120
ITTEQNGKPE PKAEELKVSE PKKADAKNAA PAKNAATAKH VKVVDPKDED SDDDDESDDE  180
IGSSDDEMEN ADSDSEDEDD SDEDDEEETP VKKVDQGKKR PNESASKTPI SSKKSKNATP  240
EKTDGKKAGH TATPHPKKGG KTPNSDAKTP KSGGGLSCSS CSKTFNSETG LTQHSKAKHG  300
AK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.122330.0leaf| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g084815.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1457980.0BT145798.1 Medicago truncatula clone JCVI-FLMt-15E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464908.10.0histone deacetylase HDT1
SwissprotQ8LJS21e-103HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLI3SZA00.0I3SZA0_MEDTR; Histone deacetylase 2a, putative
STRINGXP_004487531.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-26histone deacetylase 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]