PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g085015.1
Common NameMTR_2g085015
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 228aa    MW: 25504.7 Da    PI: 6.3606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g085015.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-164697255
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr++ + ++Wv+eI +p   + k+ r++lg++ t+e+Aa a++ a ++l+g
  Medtr2g085015.1 46 IYKGVRQRNNGNKWVCEILEP---NkKKSRIWLGTYPTPEMAAIAHDVAVLALHG 97
                     69***************9998...5477*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-2645107No hitNo description
PfamPF008474.2E-124597IPR001471AP2/ERF domain
PROSITE profilePS5103220.5646105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2646107IPR001471AP2/ERF domain
SMARTSM003801.3E-2646111IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2046107IPR016177DNA-binding domain
PRINTSPR003672.6E-54758IPR001471AP2/ERF domain
PRINTSPR003672.6E-57187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNLENESTNH YLSSQSNNQN SPSKPNSHKK KTKRGRKKFK ETRHPIYKGV RQRNNGNKWV  60
CEILEPNKKK SRIWLGTYPT PEMAAIAHDV AVLALHGTSA MFNFPDSVSL LPVSKSTSPE  120
DIRETATEFA NTASSSSFVN NLSVVTKPCL VECKSQEIRV LGGDNIENMN NNDDESKAMF  180
FDEEVLFNMP GFLNSMAEGL LITPPSMKSA LDWDNVDCEM DLTLWTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13240KRGRKKFKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g085015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464925.11e-169dehydration-responsive element-binding protein 1F
TrEMBLA0A072VLE61e-168A0A072VLE6_MEDTR; CBF-like transcription factor
STRINGGLYMA12G30740.23e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-39C-repeat-binding factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]