PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g086420.2
Common NameMTR_2g086420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 497aa    MW: 55329.1 Da    PI: 6.7998
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g086420.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10192233445
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                       k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Medtr2g086420.2 192 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDL 233
                      6889*************************9877777766666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-6189281IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232191235IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-8192233No hitNo description
PfamPF001701.3E-7192234IPR004827Basic-leucine zipper domain
CDDcd147082.78E-22193243No hitNo description
SuperFamilySSF579598.13E-7193235No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
PfamPF141442.6E-27275349IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MASQRIGELD FSETGHSTHH VPYGIHHRIN NNNPSSSLMN EESGFDFGEL EEAIVLQGVK  60
NGNDETKASF FTARPAATLE MFPSWPMRFH QTSTGGGNKS GGESSDSALS SKNENPFEPE  120
SPLSSKKASS FSSDHNNNMD QQNLQLQQQK MIISNDASAA IRTASSSQNQ ISAAAKEKKK  180
GAGSTSDKPL DAKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QDLQRARSQG  240
MFMDWSGGVG GNISSGGAMF DMEYGRWLEE DNRLLTELRN GLQAALTDNE MRVMVDGYLC  300
HYDQIFRLKG VTAKSDVFHL INGMWTSQAE RCFLWIGGFR PSEIIMMLIQ QLEPLAEQQI  360
MGMYGLRHSS QQAEEALSQG LDQLQQSLVD TIAGGPLVDG VQQMVVAIGK LSNLEGFLRQ  420
ADNLRQQTLH QLCRLLTLRQ AVRSFLVIGE YYGRLRALSS LWASRPRENM ISDDNSCQTT  480
TDMQMVQPSQ NHFTNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.114380.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g086420.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464946.10.0transcription factor TGA9 isoform X2
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A072VBJ60.0A0A072VBJ6_MEDTR; BZIP family transcription factor
STRINGAES670650.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-159bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]