PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g086690.1
Common NameMTR_2g086690
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 250aa    MW: 28467.6 Da    PI: 7.1285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g086690.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.42.6e-4451362128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      ppGfrF Pt+eelv +yL++++eg+k  +++++i+ +di+  ePw+Lp+    ++++++++w+fFs+r+ ++ +g r+nr+t+ gyWkatg+  
  Medtr2g086690.1   5 PPGFRFYPTEEELVGFYLHNQLEGQKhEDINKIIPLIDINGKEPWNLPTfageRCRGDTEQWFFFSPRQDRELRGGRPNRTTSCGYWKATGSPS 98 
                      8***********************994455667***************546766667888********************************** PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+s++++++g++kt+vfy g+ap+g+kt+W mhey++
  Medtr2g086690.1  99 YVYSSNNKVIGIRKTMVFYIGKAPSGRKTKWKMHEYKA 136
                      ************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.5764162IPR003441NAC domain
SuperFamilySSF1019411.44E-464160IPR003441NAC domain
PfamPF023655.4E-255135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGDSPPGFRF YPTEEELVGF YLHNQLEGQK HEDINKIIPL IDINGKEPWN LPTFAGERCR  60
GDTEQWFFFS PRQDRELRGG RPNRTTSCGY WKATGSPSYV YSSNNKVIGI RKTMVFYIGK  120
APSGRKTKWK MHEYKAIQQS DQSNTNPPKL RHEFSLCRVY VISGSFSSFD RRPLERPMTE  180
LQHAASTSTQ QVVAELNGSN SYATSRGIER DHDASLNIGG SSGTNWNDVP NNGVDEPEPI  240
WEWEQLNWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-35516021166NAC domain-containing protein 19
3swm_B3e-35516021166NAC domain-containing protein 19
3swm_C3e-35516021166NAC domain-containing protein 19
3swm_D3e-35516021166NAC domain-containing protein 19
3swp_A3e-35516021166NAC domain-containing protein 19
3swp_B3e-35516021166NAC domain-containing protein 19
3swp_C3e-35516021166NAC domain-containing protein 19
3swp_D3e-35516021166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g086690.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1997611e-170AC199761.2 Medicago truncatula chromosome 2 BAC clone mth2-65m5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596841.10.0NAC domain-containing protein 90
SwissprotQ9FMR35e-84NAC90_ARATH; NAC domain-containing protein 90
TrEMBLG7IHF40.0G7IHF4_MEDTR; NAC transcription factor-like protein
STRINGAES670920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-86NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]