PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g087740.1

Common Name

MTR_2g087740

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

YABBY

Protein Properties

Length: 196aa MW: 21670.6 Da PI: 9.1808

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g087740.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	230.7	3.6e-71	6	170	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke.esast 94 +++ + e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+ +s + + ++ d+ k++l + ++e+ ++ v+ + +s+s+ Medtr2g087740.1 6 NMMATNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGATSLQSFTPQQ-DHPQKQQLIN---CHQEASRKEVVGSsSSSSS 95 678899****************************************9988855444433.3343333333...2222222222222022222 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s s+ k + +e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Medtr2g087740.1 96 SSSKCKAFQPLVHEQPRTPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 170 22222334566788899888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.5E-73	10	170	IPR006780	YABBY protein
SuperFamily	SSF47095	9.56E-9	108	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.0E-5	118	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSMDMNMMAT NERVCYVHCN FCNTTLAVSV PCSSLLTIVT VRCGHCANLL SVNMGATSLQ 60 SFTPQQDHPQ KQQLINCHQE ASRKEVVGSS SSSSSSSSKC KAFQPLVHEQ PRTPPIRPPE 120 KRQRVPSAYN RFIKEEIQRI KASNPDISHR EAFSTAAKNW AHFPHIHFGL KLDGSKQAKL 180 DHGVGEATQK SNGFY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g087740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136096	0.0	BT136096.1 Medicago truncatula clone JCVI-FLMt-10K9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003596925.1	1e-146	putative axial regulator YABBY 2 isoform X1
Refseq	XP_024632027.1	1e-146	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	4e-76	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	G7IRH4	1e-145	G7IRH4_MEDTR; Plant-specific transcription factor YABBY family protein
STRING	AES67176	1e-145	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-75	YABBY family protein

Link Out ? help Back to Top
Phytozome	Medtr2g087740.1
Entrez Gene	11416031

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]