PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g089100.1
Common NameMTR_2g089100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 459aa    MW: 51691.2 Da    PI: 5.75
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g089100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.91.2e-87504422373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee.laalkl..fsevsPilk 92 
                      ++lLl+cA a++s+d +laq++++ l++ asp gd++qRl++ f++AL +r +r +++ +   + + ++ ++ +++ +++++l  ++++ P+++
  Medtr2g089100.1  50 EKLLLHCASALESNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPTSM---NFKGSN-YTIQRRlMSVTELagYVDLIPWHR 139
                      689***************************************************555444...444444.334444044444478********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.. 181
                      f++ + N+ I ++++g +rvHi+Df+i+ ++QWp+++++La+ pegppslRiT+ +    +    + +++e+g+rL +fA+  +vpfefnv+  
  Medtr2g089100.1 140 FGFCASNNEIFKSIKGFKRVHILDFSITPCMQWPTFIDSLAKLPEGPPSLRITVPSFRPMVpplVNISIHEVGQRLGNFAKFKDVPFEFNVIgd 233
                      *****************************************************9888555588999**************************** PP

             GRAS 182 ..................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFler 256
                                         ++ l+ l++++L+++++Eal++n++  l +l d++  ++   rd++++lvk+l+P++v +v++++d++++s+  r
  Medtr2g089100.1 234 nvsltsedlsniestnfhFESMLSLLNPSMLNLREDEALVINCQNWLRYLSDDRKGQNIsLRDAFMNLVKGLNPQIVLLVDEDCDLSASSLTSR 327
                      ****9999999998888666688899************************99876665559********************************* PP

             GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                      ++ ++++ +  fd+l++ lp++s +r+  E   +g++i+n+++ eg +r+er e+ ++ ++r+++aG+ +vp+ e+++ ++k ll +++  g+ 
  Medtr2g089100.1 328 ITASFNHLWIPFDALDTFLPKDSCQRTEFESD-IGQKIENIISFEGHQRIERLESGMQMSQRMKNAGYFSVPFCEETVLEVKGLLDEHA-SGWG 419
                      ********************************.********************************************************.8899 PP

             GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                      ++ e+  lvl+Wk+++ v+++aW
  Medtr2g089100.1 420 MKREESMLVLTWKGNSCVFATAW 442
                      99999****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.24523424IPR005202Transcription factor GRAS
PfamPF035144.0E-8550442IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MHVHMKAELK ATSISFQNPT LFNTHQNTPP LPEPEELKGC LGSLDGACIE KLLLHCASAL  60
ESNDITLAQQ VMWVLNNVAS PLGDTNQRLT SWFLRALISR ASRICPTSMN FKGSNYTIQR  120
RLMSVTELAG YVDLIPWHRF GFCASNNEIF KSIKGFKRVH ILDFSITPCM QWPTFIDSLA  180
KLPEGPPSLR ITVPSFRPMV PPLVNISIHE VGQRLGNFAK FKDVPFEFNV IGDNVSLTSE  240
DLSNIESTNF HFESMLSLLN PSMLNLREDE ALVINCQNWL RYLSDDRKGQ NISLRDAFMN  300
LVKGLNPQIV LLVDEDCDLS ASSLTSRITA SFNHLWIPFD ALDTFLPKDS CQRTEFESDI  360
GQKIENIISF EGHQRIERLE SGMQMSQRMK NAGYFSVPFC EETVLEVKGL LDEHASGWGM  420
KREESMLVLT WKGNSCVFAT AWVPSEIRDH IGMDAHVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-504344581475Protein SHORT-ROOT
5b3h_B5e-514344527421Protein SHORT-ROOT
5b3h_E5e-514344527421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g089100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1452180.0AC145218.29 Medicago truncatula clone mth2-34l18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597052.10.0scarecrow-like protein 32
TrEMBLG7IRJ40.0G7IRJ4_MEDTR; GRAS family transcription factor
STRINGAES673030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-117GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]