PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g089170.1
Common NameMTR_2g089170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 189aa    MW: 20501.8 Da    PI: 8.3105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g089170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-1863113155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++  +g+Wv+eIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  Medtr2g089170.1  63 CNYRGVRQRT-WGKWVSEIREP---N-RgSRLWLGTFTTAIGAALAYDEAARAMYG 113
                      56*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1163113IPR001471AP2/ERF domain
CDDcd000186.71E-3163123No hitNo description
PROSITE profilePS5103221.33864121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3264122IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2064121IPR016177DNA-binding domain
SMARTSM003801.1E-3564127IPR001471AP2/ERF domain
PRINTSPR003672.8E-96576IPR001471AP2/ERF domain
PRINTSPR003672.8E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MLAKACEKGD GSKSLGKILA RWREYNAQLD AGNDANKPVR KVAAKGSKKG CMKGKGGPEN  60
SRCNYRGVRQ RTWGKWVSEI REPNRGSRLW LGTFTTAIGA ALAYDEAARA MYGSRARLNF  120
PNVSVTRFSD ESPNDSPDAN HLAVSTNTES MIIPDNSGIG VEDSNDMEPT SLCLSIKQEN  180
EEGESEIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1964121563ATERF1
3gcc_A4e-1964121563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.131320.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g089170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1452180.0AC145218.29 Medicago truncatula clone mth2-34l18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597059.21e-138putative dehydration-responsive element-binding protein 2H
RefseqXP_024633319.11e-138putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR23e-47DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLG7IRK11e-136G7IRK1_MEDTR; Dehydration-responsive element-binding protein
STRINGAES673101e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.24e-39DRE-binding protein 2A
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]