PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g089420.1
Common NameMTR_2g089420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 452aa    MW: 52176.7 Da    PI: 4.5565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g089420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +v+++G  +W+  +r  g+ R++k+c++rw +yl
  Medtr2g089420.1 13 KGSWTHEEDKKLIAYVTRYGCWNWRQLPRFAGLERCGKSCRLRWMNYL 60
                     799*****************99************************97 PP
2Myb_DNA-binding53.55.4e-1766110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E+el+++++++lG++ W+ Ia+ ++ gRt++++k++w++ 
  Medtr2g089420.1  66 RGNFNQQEEELIIKLHEKLGNR-WTVIASNFP-GRTDNEIKNHWHTT 110
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.749860IPR017930Myb domain
SuperFamilySSF466899.8E-2910107IPR009057Homeodomain-like
SMARTSM007172.7E-91262IPR001005SANT/Myb domain
PfamPF002499.6E-131360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-221467IPR009057Homeodomain-like
CDDcd001672.92E-81560No hitNo description
PROSITE profilePS5129425.16161115IPR017930Myb domain
SMARTSM007172.6E-1765113IPR001005SANT/Myb domain
PfamPF002494.2E-1566110IPR001005SANT/Myb domain
CDDcd001672.75E-1168111No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2568114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVRTPCDNNG LRKGSWTHEE DKKLIAYVTR YGCWNWRQLP RFAGLERCGK SCRLRWMNYL  60
RPDVKRGNFN QQEEELIIKL HEKLGNRWTV IASNFPGRTD NEIKNHWHTT LKKRFVKNIK  120
SKRGTRIAKD SNSNNHPTLE EPKKFEVVLE SNNDPNIANQ ISPQPSSSEL SCITMDNAIL  180
DDNDLSFMET YMENFSENFW TEPYMIDNSY VPHNHPTMEE TKKLEGVFEN NIDPNITSPL  240
SSQPFSSGFS CITTENFAST ISHENSVFDG SELPFMDAFM ETVSEFFWTE PYMIDTSYSP  300
YKHPTLEEAN KFEGVLENNN NPNTASTTIS YENPILDDND LHFMDAYIEN LSENFWSEPY  360
MIDSSHFLRN HLTMEEAKKI EGVFEYNIDP NSVSPVSSQP SSNGFSSITM ENVTSTISHE  420
NPLMDALFPA ECEHEYFSSV YDVEFWSHTA E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27111145107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g089420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1654300.0AC165430.3 Medicago truncatula chromosome 2 BAC clone mth2-67a21, complete sequence.
GenBankAC2255130.0AC225513.4 Medicago truncatula clone mth2-96m13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597078.20.0protein ODORANT1
TrEMBLG7IRM00.0G7IRM0_MEDTR; Myb transcription factor
STRINGAES673290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-48myb domain protein 15
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]