PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g089450.1
Common NameMTR_2g089450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 251aa    MW: 29000.7 Da    PI: 7.8861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g089450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Medtr2g089450.1 14 KGTWTPEEDKKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding52.41.3e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+e +++++++lG++ W+ I++ ++ gRt++++k++w++
  Medtr2g089450.1  67 RGSFSHEEEETIIKLHEKLGNR-WTMISANLP-GRTDNEIKNYWHT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.926961IPR017930Myb domain
SuperFamilySSF466893.19E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-101363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-241568IPR009057Homeodomain-like
CDDcd001671.22E-81661No hitNo description
PROSITE profilePS5129426.09462116IPR017930Myb domain
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2569117IPR009057Homeodomain-like
CDDcd001674.97E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVRTPYCDKN GLRKGTWTPE EDKKLIAYVT RYGCWNWRQL PKFAGLERCG KSCRLRWLNY  60
LRPDIKRGSF SHEEEETIIK LHEKLGNRWT MISANLPGRT DNEIKNYWHT TIKKTLVKNK  120
SNTKRGTKKA KDSNSKNHPT MEKPKKLGEM LENNSDFNIT SPPSSQPSTS ASSCISLMDT  180
AATTTISYEN SSLFDDYDDL PFMDAYVSEN FWTEPYIIDS LYVLPNEDSI LLEHEYFSPV  240
YDAELWSHGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131KRGTKKAKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g089450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1654300.0AC165430.3 Medicago truncatula chromosome 2 BAC clone mth2-67a21, complete sequence.
GenBankAC2255130.0AC225513.4 Medicago truncatula clone mth2-96m13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597081.10.0transcription factor MYB14
TrEMBLG7IRM30.0G7IRM3_MEDTR; Myb transcription factor
STRINGAES673320.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-59myb domain protein 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]