PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g090235.1
Common NameMTR_2g090235
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 427aa    MW: 48547.1 Da    PI: 6.2977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g090235.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19217267256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Medtr2g090235.1 217 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 267
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-34216276No hitNo description
SuperFamilySSF541716.47E-23217275IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-32217275IPR001471AP2/ERF domain
PROSITE profilePS5103222.932217274IPR001471AP2/ERF domain
SMARTSM003801.9E-39217280IPR001471AP2/ERF domain
PRINTSPR003678.5E-11218229IPR001471AP2/ERF domain
PfamPF008472.2E-12218267IPR001471AP2/ERF domain
PRINTSPR003678.5E-11240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAAAKNSGKF NKDFGDETHN NHNKVTKIGE SQVNWEIEKG KSVEISSSQR HHWKPVFDEA  60
SNMSHNRPYK KSKSPQRENQ NQNQNQFQPF SFPSSASSSS RHVFPFAFDH NSEQFPQQFG  120
PNNNLPFHPP TQNQQQMISF GTQSQQQTNI VPYPPMLSQQ QHQQQILQYW SDALNLSPRG  180
RMLMMMNNNN NRYLGQYSNN NGPMFRPQIQ PISTTKLYRG VRQRHWGKWV AEIRLPRNRT  240
RLWLGTFDTA EDAALAYDRE AFKLRGENAR LNFPDLFLNK GKEKENEKEE EPSSPPPTET  300
TISPVTSPSS NTATKQPEPP PMQTLPMEES NENDSGIGSS DATVSEGGEG VSVSQSQELV  360
WSEMSAWFNA IPAAWGPGSP VWDDNLFSQS QNPFSNLNQQ SEFNDFDSHT ESGSSIRPFF  420
WNNDQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21216274160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g090235.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465072.10.0ethylene-responsive transcription factor ERF053
SwissprotQ9SKT12e-60ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A072VBC90.0A0A072VBC9_MEDTR; Ethylene response factor
STRINGXP_004487298.11e-167(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]