PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g090425.1
Common NameMTR_2g090425
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 328aa    MW: 36937.8 Da    PI: 8.225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g090425.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-101767455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       +++E++RR++++  f++L +llP+ +  ++   l   + + +A++YIksL+
  Medtr2g090425.1 17 ERKIVEKNRRNQMKILFSKLNSLLPSyN--QKELALPLPDQVDEAINYIKSLE 67
                     5689**********************55..55555****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-91183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.001451171No hitNo description
PROSITE profilePS5088811.4961366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-91583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-61767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDQNQQGGRP SSSTKVERKI VEKNRRNQMK ILFSKLNSLL PSYNQKELAL PLPDQVDEAI  60
NYIKSLEINI KLAKEKKESL MGNKKRSRGG WSSSYGAKGS IELPKIEIHE IGPTLQVIVT  120
CGVDEHFIFC EIMRILHEEN VDVISSNSSL AGDSLLHTVL AQIPQSLLQF GETKISKRLK  180
AFVDGSMSDV ETDPQLWDLE IGIALRSRES PIEFAELHEK PMDFDRLLHR EEPTMSYIFS  240
SCYCKCSNKI LRPTTSAKTD LIILQEIASK SRVILREMEA KQKLTQLLAN MHHIILTGSL  300
TEGHLITLLK IFSISLWLIP TPAQTKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g090425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631491.11e-145transcription factor bHLH162
TrEMBLA0A072VBG70.0A0A072VBG7_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA06G44660.22e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-29bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]